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Showing all 47 items for (author: senda & t)

EMDB-38986:
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in LMNG detergent
Method: single particle / : Hamaguchi-Suzuki N, Adachi N, Moriya T, Kawasaki M, Suzuki K, Anzai N, Senda T, Murata T

EMDB-38987:
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in nanodisc
Method: single particle / : Hamaguchi-Suzuki N, Adachi N, Moriya T, Kawasaki M, Suzuki K, Anzai N, Senda T, Murata T

PDB-8y6h:
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in LMNG detergent
Method: single particle / : Hamaguchi-Suzuki N, Adachi N, Moriya T, Kawasaki M, Suzuki K, Anzai N, Senda T, Murata T

PDB-8y6i:
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in nanodisc
Method: single particle / : Hamaguchi-Suzuki N, Adachi N, Moriya T, Kawasaki M, Suzuki K, Anzai N, Senda T, Murata T

EMDB-35080:
Far-red light-harvesting complex of Antarctic alga Prasiola crispa
Method: single particle / : Kosugi M, Kawasaki M, Shibata Y, Moriya T, Adachi N, Senda T

PDB-8hw1:
Far-red light-harvesting complex of Antarctic alga Prasiola crispa
Method: single particle / : Kosugi M, Kawasaki M, Shibata Y, Moriya T, Adachi N, Senda T

EMDB-32381:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1)
Method: single particle / : Kawasaki M, Miyakawa T, Yang J, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

EMDB-32382:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS
Method: single particle / : Kawasaki M, Miyakawa T, Yang J, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

EMDB-32383:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS, 4x(beta-Asp-Arg), and aspartate
Method: single particle / : Miyakawa T, Yang J, Kawasaki M, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

EMDB-32384:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS and 4x(beta-Asp-Arg)
Method: single particle / : Miyakawa T, Yang J, Kawasaki M, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

PDB-7wac:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1)
Method: single particle / : Kawasaki M, Miyakawa T, Yang J, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

PDB-7wad:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS
Method: single particle / : Kawasaki M, Miyakawa T, Yang J, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

PDB-7wae:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS, 4x(beta-Asp-Arg), and aspartate
Method: single particle / : Miyakawa T, Yang J, Kawasaki M, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

PDB-7waf:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS and 4x(beta-Asp-Arg)
Method: single particle / : Miyakawa T, Yang J, Kawasaki M, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

EMDB-32531:
Cryo-EM structure of prenyltransferase domain of Macrophoma phaseolina macrophomene synthase at 3.17 angstrom resolution
Method: single particle / : Adachi N, Mori T, Senda T, Abe I

EMDB-32532:
Cryo-EM structure of cross-linked Macrophomina phaseolina macrophomene synthase at 4.0 angstrom resolution
Method: single particle / : Adachi N, Mori T, Senda T, Abe I

PDB-7wij:
Cryo-EM structure of prenyltransferase domain of Macrophoma phaseolina macrophomene synthase
Method: single particle / : Mori T, Adachi N, Abe I

EMDB-30808:
Cryo-EM structure of DgpB-C at 2.85 angstrom resolution
Method: single particle / : Mori T, Moriya T, Adachi N, Kawasaki M, Senda T, Abe I

EMDB-30809:
Cryo-EM structure of DfgA-B at 2.54 angstrom resolution
Method: single particle / : Mori T, Moriya T, Adachi N, Kawasaki M, Senda T, Abe I

PDB-7drd:
Cryo-EM structure of DgpB-C at 2.85 angstrom resolution
Method: single particle / : Mori T, Moriya T, Adachi N, Senda T, Abe I

PDB-7dre:
Cryo-EM structure of DfgA-B at 2.54 angstrom resolution
Method: single particle / : Mori T, Moriya T, Adachi N, Senda T, Abe I

EMDB-31089:
Cryo-EM structure of the octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Method: single particle / : Minato T, Teramoto T, Adachi N, Hung NK, Yamada K, Kawasaki M, Akutsu M, Moriya T, Senda T, Ogo S, Kakuta Y, Yoon KS

EMDB-31090:
Cryo-EM structure of the hexameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Method: single particle / : Minato T, Teramoto T, Adachi N, Hung NK, Yamada K, Kawasaki M, Akutsu M, Moriya T, Senda T, Ogo S, Kakuta Y, Yoon KS

PDB-7eh7:
Cryo-EM structure of the octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Method: single particle / : Minato T, Teramoto T, Adachi N, Hung NK, Yamada K, Kawasaki M, Akutsu M, Moriya T, Senda T, Ogo S, Kakuta Y, Yoon KS

PDB-7eh8:
Cryo-EM structure of the hexameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Method: single particle / : Minato T, Teramoto T, Adachi N, Hung NK, Yamada K, Kawasaki M, Akutsu M, Moriya T, Senda T, Ogo S, Kakuta Y, Yoon KS

EMDB-31432:
Cryo-EM structure of the minimal protein-only RNase P from Aquifex aeolicus reveals structural insight into precursor tRNA recognition and catalysis
Method: single particle / : Teramoto T, Koyasu T, Adachi N, Kawasaki M, Moriya T, Numata T, Senda T, Kakuta Y

PDB-7f3e:
Cryo-EM structure of the minimal protein-only RNase P from Aquifex aeolicus
Method: single particle / : Teramoto T, Koyasu T, Adachi N, Kawasaki M, Moriya T, Numata T, Senda T, Kakuta Y

EMDB-30440:
Cryo-EM analysis of the nonribosomal peptide synthetase, FmoA3
Method: single particle / : Sone K, Harada A, Kawai S, Urano N, Adachi N, Moriya T, Kawasaki M, Katsuyama Y, Senda T, Ohnishi Y

EMDB-30412:
Cryo-EM structure of K+-bound hERG channel
Method: single particle / : Asai T, Adachi N

EMDB-30413:
Cryo-EM structure of K+-bound hERG channel in the presence of astemizole
Method: single particle / : Asai T, Adachi N

PDB-7cn0:
Cryo-EM structure of K+-bound hERG channel
Method: single particle / : Asai T, Adachi N, Moriya T, Kawasaki M, Suzuki K, Senda T, Murata T

PDB-7cn1:
Cryo-EM structure of K+-bound hERG channel in the presence of astemizole
Method: single particle / : Asai T, Adachi N, Moriya T, Kawasaki M, Suzuki K, Senda T, Murata T

EMDB-0999:
Cryo-EM reconstruction of TLR7/Cpd-3 (SM-394830) complex in closed form
Method: single particle / : Zhang Z, Ohto U, Shimizu T

EMDB-1000:
Cryo-EM reconstruction of TLR7/Cpd-6 (DSR-139293) complex in closed form
Method: single particle / : Zhang Z, Ohto U, Shimizu T

EMDB-30000:
Cryo-EM reconstruction of TLR7/Cpd-6 (DSR-139293) complex in open form
Method: single particle / : Zhang Z, Ohto U, Shimizu T

EMDB-30001:
Cryo-EM reconstruction of TLR7/Cpd-7 (DSR-139970) complex in open form
Method: single particle / : Zhang Z, Ohto U, Shimizu T

EMDB-30002:
Cryo-EM structure of TLR7/Cpd-7 (DSR-139970) complex in open form
Method: single particle / : Zhang Z, Ohto U, Shimizu T

PDB-6lw1:
Cryo-EM structure of TLR7/Cpd-7 (DSR-139970) complex in open form
Method: single particle / : Zhang Z, Ohto U, Shimizu T

EMDB-0730:
CryoEM map and model of Nitrite Reductase at pH 6.2
Method: single particle / : Adachi N, Yamaguchi T, Moriya T, Kawasaki M, Koiwai K, Shinoda A, Yamada Y, Yumoto F, Kohzuma T, Senda T

EMDB-0731:
CryoEM map and model of Nitrite Reductase at pH 8.1
Method: single particle / : Adachi N, Yamaguchi T, Moriya T, Kawasaki M, Koiwai K, Shinoda A, Yamada Y, Yumoto F, Kohzuma T, Senda T

PDB-6knf:
CryoEM map and model of Nitrite Reductase at pH 6.2
Method: single particle / : Adachi N, Yamaguchi T, Moriya T, Kawasaki M, Koiwai K, Shinoda A, Yamada Y, Yumoto F, Kohzuma T, Senda T

PDB-6kng:
CryoEM map and model of Nitrite Reductase at pH 8.1
Method: single particle / : Adachi N, Yamaguchi T, Moriya T, Kawasaki M, Koiwai K, Shinoda A, Yamada Y, Yumoto F, Kohzuma T, Senda T

EMDB-30362:
2.05 angstrom resolution structure determination of sulfur oxygenase reductase using 200kV cryo-EM
Method: single particle / : Moriya T, Naruhiko A, Sato Y, Arakawa T, Kawasaki M, Yamada C, Fushinobu S, Senda T

EMDB-30073:
Cryo-EM structure of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Method: single particle / : Sato Y, Adachi N

PDB-6m3x:
Cryo-EM structure of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Method: single particle / : Sato Y, Adachi N, Moriya T, Arakawa T, Kawasaki M, Yamada C, Senda T, Fushinobu S

EMDB-5584:
Life in the extremes: atomic structure of Sulfolobus Turreted Icosahedral Virus
Method: single particle / : Veesler D, Ng TS, Sendamarai AK, Eilers BJ, Lawrence CM, Lok SM, Young MJ, Johnson JE, Fu CY

PDB-3j31:
Life in the extremes: atomic structure of Sulfolobus Turreted Icosahedral Virus
Method: single particle / : Veesler D, Ng TS, Sendamarai AK, Eilers BJ, Lawrence CM, Lok SM, Young MJ, Johnson JE, Fu CY

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

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